2016-10-31T06:59:08-07:00
Resource:Brain Architecture Management System
BAMS
uncurated
http://brancusi.usc.edu/bkms/
Database and repository for information about neural circuitry, storing and analyzing data specifically concerned with nomenclature and its hierarchical taxonomy, with axonal connections between regions, and with the neuronal cell types that form regions and fiber pathways. This set of inference engines currently has 5 interrelated modules: Brain Parts (gray matter regions, major fiber tracts, and ventricles), Cell Types, Molecules, Connections (between regions and cell types), and Relations (between parts identified different neuroanatomical atlases).
BAMS is also an online knowledge management system designed to handle neurobiological information at different levels of organization of the vertebrate nervous system (NS). It handles data and metadata collated from original literature, or inserted by scientists that is associated to four levels of organization of the vertebrate NS: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.
BAMS invites and encourages neuroscientists to help populate BAMS with connectivity and cell type data. This is the only way such an ambitious undertaking can move toward being comprehensive.
If you would like to set up an account in the system to insert data either in the public part of BAMS, or in the personal account, please contact the system administrator. If you are registered as a collator of BAMS, you can start inserting gene expression data in your Personal account. If you would like to use the newly implemented Personal Workspace, to receive updates about new features and tools added to BAMS, or to know when new data is inserted please go to the Registration page. You can use the Personal Workspace to save your searches of brain regions, neuroanatomical connections, and molecules.<br />
Registering in the Personal Workspace also allows associating your personal annotations with reports of brain regions, neuroanatomical connections, and molecules. BAMS contains neuroanatomical nomenclatures for the rat, human, macaque, cat, and mouse (more than 8000 names). The system contains to date on the order of 40,000 reports of connections between different brain structures in the rat, as collated from the literature.<br />
Category:MH61223
Category:NS16686
Category:NS50792-01
nif-0000-00018
Resource:Brain Architecture Management System
2014-12-20T00:00:00
Resource
The Brain Architecture Management System
Resource:BAMS Thesaurus
Resource:BAMS Neuroanatomical Ontology
Resource:BAMS Nested Regions
Resource:BAMS Cells
Resource:BAMS Connectivity
Resource:Integrated Nervous System Connectivity
Resource:Integrated Manually Extracted Annotation
RelatedTo
Resource
Resource:NIF Data Federation
Usedby
Synonym
Resource:Human Brain Project
National Institute of Biomedical Imaging and Bioengineering
National Institute of Neurological Disorders and Stroke
National Institute of Mental Health
Supporting Agency
SuperCategory
Rat
Mouse
Human
Cat
Macaque
Species
ModifiedDate
Label
Molecule
Cell type
Connection
Brain region
Neuroanatomy
Brain
Pathway
Connectivity
Taxonomy
Nomenclature
Neural circuitry
Immunohistochemistry
Radioactive tracer
Gene expression
Molecular neuroanatomy resource
Keywords
University of Southern California; California; USA
Is part of
Id
Data repository
Ontology
Database
Has role
Grant
File:BAMS.PNG
ExampleImage
Definition
DefiningCitation
CurationStatus
Abbrev