2012-03-01T18:58:15-08:00
Resource:LifeDB
LifeDB
curated
http://www.lifedb.de/lifedb/
<br />
LifeDB integrates data regarding full length cDNA clones and data on expression of encoded protein and their subcellular localization on mammalian cell line. LifeDB enables the scientific community to systematically search and select genes, proteins as well as cDNA of interest by specific database identifiers as well as gene name. It enables to visualize cDNA clone and subcellular location of proteins. It also links the results to external biological databases in order to provide a broader functional information.
LifeDB also provides an annotation pipeline which facilitates an improved mapping of clones to known human reference transcripts from the RefSeq database and the Ensembl database. An advanced web interface enables the researchers to view the data in a more user friendly manner.
Users can search using any one of the following search options available both in "Search gene and cDNA clones" and "Search Sub-cellular locations of human proteins": By Keyword, By gene/transcript identifier, By plate name, By clone name, By cellular location.
* The "Search genes and cDNA clones" results include: Gene Name, Ensemble ID, Genomic Region, Clone name, Plate name, Plate position, Classification class, Synonymous SNP's, Non- synonymous SNP's, Number of ambiguous positions, and Alignment with reference genes.
* The "Search sub-cellular locations of human proteins" results include: Subcellular location, Gene Name, Ensemble ID, Clone name, True localization, Images, Start tag and End tag.
Every result page has an option to download result data (excluding the microscopy images). On click of 'Download results as CSV-file' link in the result page the user will be given a choice to open or save result data in form of a CSV (Comma Separated Values) file. Later the CSV file can be easily opened using Excel or OpenOffice.
Category:01KW0012
Category:01GR0101
Category:01GR0420
Category:503438
nif-0000-03081
Resource:LifeDB
2011-08-18T00:00:00
16381901, 14681468
Resource
(TRANSFOG)
European Union
Bundesministerium fur Bildung und Forschung
Supporting Agency
PMID
ModifiedDate
Label
ORF
Subcellular
CDNA clone
Gene
Protein
Human
Keywords
German Cancer Research Center
Is part of
Id
Image
Database
Has role
Grant
File:LifeDB.PNG
ExampleImage
Definition
DefiningCitation
CurationStatus
Abbrev