2011-10-17T06:47:31-07:00
Resource:VIDA
VIDA
curated
http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA3/VIDA.html
<br />
VIDA contains a collection of homologous protein families derived from open reading frames from complete and partial virus genomes. For each family, users can get an alignment of the conserved regions, functional and taxonomy information, and links to DNA sequences and structures.<br />
* Search homologous protein families from particular virus families
* Links to complete genome sequence: Arteriviridae, Coronaviridae, Herpesviridae, Poxviridae
The Virus Database at University College London has been developed as a system to organize animal virus open reading frame sequences. All known and predicted protein sequences from complete and partial genomes of particular virus families are extracted from GenBank and filtered to remove 100% redundancy.
On the basis of sequence similarity the sequences are then clustered into homologous protein families (HPFs). The families are enriched with annotations including function and functional classification, related protein structures, taxonomy, length of the proteins, boundaries of the conserved region/s, virus-specific gene name and links to EMBL entries and SWISSPROT.
nif-0000-03628
Resource:VIDA
2011-07-22T00:00:00
11125070
Virus Database at University College London
Virus Database
Resource
Synonym
Biotechnology and biological sciences research council
Medical research council
Supporting Agency
PMID
ModifiedDate
Label
Papillomaviridae
Keywords
University College London; London; United Kingdom
Is part of
Id
Data set
Has role
File:VIDA.PNG
ExampleImage
Definition
DefiningCitation
CurationStatus
Abbrev