2013-08-20T10:13:24-07:00
Resource:Ensembl
ENSEMBL
curated
http://www.ensembl.org/index.html
Freely available genome databases for vertebrates and other eukaryotic species. Their goal is to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data.<br />
Ensembl allows you to:
* Upload and analyze your data and save it to your Ensembl account
* Search for a DNA or protein sequence using BLAST or BLAT
* Fetch only the data you want from the public database, using the Perl API
* Download the databases via FTP in FASTA, MySQL and other formats
* Mine Ensembl with BioMart and export sequences or tables in text, HTML, or Excel format
Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom. The DNA sequences and assemblies used in the Ensembl genebuild are provided by various projects around the world.
Ensembl has entered into an agreement with UCSC and NCBI with regard to sequence identifiers in order to improve consistency between the data provided by different genome browsers. This agreement is posted on the website.
nif-0000-21145
Resource:Ensembl
2013-08-08T00:00:00
Resource
Resource:G:Profiler
Resource:Rat Gene Symbol Tracker
Resource:go-db-perl
Resource:DECIPHER
Resource:RIKEN integrated database of mammals
Resource:FlyMine
Resource:VBASE2
Resource:PeptideAtlas
Resource:Bgee: a dataBase for Gene Expression Evolution
Resource:Sanger Mouse Resources Portal
Resource:AnimalTFDB
Resource:Pre Ensembl
Resource
Biotechnology and Biological Sciences Research Council
National Human Genome Research Institute
Medical Research Council
FP6)
(FP7
European Union
Resource:European Molecular Biology Laboratory; Heidelberg; Germany
Wellcome Trust
Supporting Agency
SuperCategory
Rodent
Primate
Zebrafish
Mouse
Human
Eukaryote
Vertebrate
Species
Resource:Biositemaps
Resource:Monarch Initiative
Resource:Ensembl Genomes
RelatedTo
ModifiedDate
Label
Protein
DNA
Regulatory data
Genetic variation
Comparative genomics
Gold standard or authority
Metazoic
Variation
Sequence
Regulatory
Genomic
Genome
Gene
Keywords
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
Resource:European Bioinformatics Institute
Is part of
Id
Web service
Data analysis service
Database
Has role
File:Ensembl.PNG
ExampleImage
Definition
DefiningCitation
CurationStatus
Public
Free
Availability
Abbrev