2013-07-14T17:20:42-07:00
Resource:DONE: Detection of Outlier NEurons
DONE
uncurated
http://www.biological-networks.org/p/outliers/
Software that performs a morphology-based approach for the automatic identification of outlier neurons based on neuronal tree structures. This tool was used by Zawadzki et al. (2012), who reported on and its application to the NeuroMorpho database. For the analysis, each neuron is represented by a feature vector composed of 20 measurements, which are projected into lower dimensional space with PCA. Bivariate kernel density estimation is then used to obtain a probability distribution for cells. Cells with high probabilities are understood as archetypes, while those with the small probabilities are classified as outliers. Further details about the method and its application in other domains can be found in Costa et al. (2009) and Echtermeyer et al. (2011).
This version requires Matlab (Mathworks Inc, Natick, USA) and allows the user to apply the workflow using a graphical user interface.
References:
* L. d. F. Costa, F. A. Rodrigues, C. C. Hilgetag, and M. Kaiser. Beyond the average: Detecting global singular nodes from local features in complex networks, Europhysics Letters, 87, 1 (2009)
* C. Echtermeyer, L. d. Fontoura Costa, F. A. Rodrigues, M. Kaiser. Automatic Network Fingerprinting Through Single-Node Motifs, PLoS ONE 6, 9 (2011)
* K. d. Zawadzki, C. Feenders, M. P. Viana, M. Kaiser, and L. d. Fontoura Costa. Morphological Morphological Homogeneity of Neurons: Searching for Outlier Neuronal Cells, Neuroinformatics (2012)
Category:05/00587-5
Category:301303/06-1
Category:2010/01994-1
Category:2010/16310-0
Category:573583/2008-0
Category:EP/G03950X/1
Category:R32-10142
nlx_144348
Resource:DONE: Detection of Outlier NEurons
2013-07-08T00:00:00
22615032
Resource
Detection of Outlier NEurons
Resource
Synonym
Korean Ministry of Education Science and Technology
Resource:Code Analysis Repository and Modelling for e-Neuroscience
Engineering and Physical Sciences Research Council
CNPq
FAPESP
Supporting Agency
SuperCategory
Resource:NeuroMorpho.Org
RelatedTo
PublicationLink
PMID
ModifiedDate
Label
Neuromorphometry
MATLAB
Outlier
Archetype
Feature-space
Neuron
Keywords
Newcastle University; Newcastle upon Tyne; United Kingdom
Is part of
Id
Data processing software
Has role
Grant
Definition
DefiningCitation
CurationStatus
GNU General Public License
Availability
Abbrev