2014-10-15T10:02:30-07:00
Resource:Gene Ontology Tools
GO Tools
curated
http://www.geneontology.org/GO.tools.shtml
Collection of tools developed by the GO Consortium and by third parties. Tools are listed by category (see tables below) or alphabetically and continue to be improved and expanded. Submit your GO Tool, http://www.geneontology.org/cgi-bin/add-tool.cgi. For adding resources to this registry through the NeuroLex, http://neurolex.org/wiki/Main_Page, please refer to https://confluence.crbs.ucsd.edu/display/NIF/Resources+and+Curation#ResourcesandCuration-IncorporatingOutsideRegistriesandAccommodatingTheirTags.
You can receive support in using these tools by writing to the GO helpdesk, http://www.geneontology.org/GO.contacts.shtml
Categories include:
* Ontology or annotation browser
* Ontology or annotation search engine
* Ontology or annotation visualization
* Ontology or annotation editor
* Database or data warehouse
* Software library
* Statistical analysis
* Slimmer-type tool
* Term enrichment
* Text mining
* Protein interactions
* Functional similarity
* Semantic similarity
* Other analysis
The tools listings are currently being updated to provide users with more information. Please fill out the GO tool submission form if you would like your tool to be displayed in the tools collection on the GO website.
A list of useful ID mapping tools is also maintained on the GO wiki.
nlx_146273
Resource:Gene Ontology Tools
2014-09-03T00:00:00
Resource
Resource:Comparative Toxicogenomics Database
Resource:Candidate Genes to Inherited Diseases
Resource:FunSimMat
Resource:GOblet
Resource:GOstat
Resource:G:Profiler
Resource:Ontology Lookup Service
Resource:TM4 Microarray Software Suite: TIGR MultiExperiment Viewer
Resource:T-profiler
Resource:GOToolBox Functional Investigation of Gene Datasets
Resource:BioPerl
Resource:ErmineJ
Resource:StRAnGER
Resource:GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
Resource:WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
Resource:Short Time-series Expression Miner (STEM)
Resource:GONUTS
Resource:QuickGO
Resource:L2L Microarray Analysis Tool
Resource:Database for Annotation Visualization and Integrated Discovery
Resource:Bioconductor
Resource:Gene Ontology Browsing Utility (GOBU)
Resource:agriGO
Resource:Gene Ontology For Functional Analysis (GOFFA)
Resource:GeneTools - a collection of resources for functional annotations
Resource:GOSlimViewer
Resource:MGI GO Browser
Resource:Network Ontology Analysis
Resource:OBO-Edit
Resource:Onto-Compare
Resource:Onto-Design
Resource:Onto-Express
Resource:Onto-Express To Go (OE2GO)
Resource:OntoVisT
Resource:STRAP
Resource:CGAP GO Browser
Resource:COBrA
Resource:DynGO
Resource:Gene Class Expression
Resource:GeneInfoViz
Resource:GenNav
Resource:GOfetcher
Resource:GoFish
Resource:GOProfiler
Resource:Manatee
Resource:OnEx - Ontology Evolution Explorer
Resource:Pandora - Protein ANnotation Diagram ORiented Analysis
Resource:TAIR Keyword Browser
Resource:Tk-GO
Resource:Wandora
Resource:GOanna
Resource:GORetriever
Resource:GeneMANIA
Resource:Spotfire
Resource:GOTaxExplorer
Resource:GO Online SQL Environment (GOOSE)
Resource:go-db-perl
Resource:Onto-Miner
Resource:Onto-Translate
Resource:ToppGene Suite
Resource:DBD - Slim Gene Ontology
Resource:go-moose
Resource:go-perl
Resource:ONTO-PERL
Resource:OWLTools
Resource:Blip: Biomedical Logic Programming
Resource:LexGrid
Resource:OWL API
Resource:BiNGO: A Biological Networks Gene Ontology tool
Resource:CateGOrizer
Resource:FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products
Resource:GeneMerge
Resource:GraphWeb
Resource:ProteInOn
Resource:Avadis
Resource:ClueGO
Resource:CLASSIFI - Cluster Assignment for Biological Inference
Resource:CLENCH
Resource:EASE: the Expression Analysis Systematic Explorer
Resource:EGAN: Exploratory Gene Association Networks
Resource:FuncAssociate: The Gene Set Functionator
Resource:FuncExpression
Resource:FunCluster
Resource:FIVA - Functional Information Viewer and Analyzer
Resource:FunSpec
Resource:GARBAN
Resource:GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
Resource:GOEx - Gene Ontology Explorer
Resource:GOMO - Gene Ontology for Motifs
Resource:GeneCodis
Resource:GOALIE
Resource:GFINDer: Genome Function INtegrated Discoverer
Resource:SGD Gene Ontology Slim Mapper
Resource:GOArray
Resource:GOdist
Resource:GOHyperGAll
Resource:GoSurfer
Resource:GOtcha
Resource:MAPPFinder
Resource:MetaGeneProfiler
Resource:OntoGate
Resource:ProbeExplorer
Resource:ProfCom - Profiling of complex functionality
Resource:SeqExpress
Resource:SerbGO
Resource:SOURCE
Resource:Ontologizer
Resource:THEA - Tools for High-throughput Experiments Analysis
Resource:Generic GO Term Finder
Resource:Generic GO Term Mapper
Resource:GREAT: Genomic Regions Enrichment of Annotations Tool
Resource:GoBean: a Java application for Gene Ontology enrichment analysis
Resource:High-Throughput GoMiner
Resource:GoAnnotator
Resource:TXTGate
Resource:FastSemSim
Resource:OwlSim
Resource:G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools
Resource:FSST - Functional Similarity Search Tool
Resource:APID: Agile Protein Interaction DataAnalyzer
Resource:GO-Module
Resource:Expression Profiler
Resource:GOChase
Resource:GoPubMed
Resource:Whatizit
Resource:PiNGO
Resource:RamiGO
Resource:REViGO
Resource:Flash Gviewer
Resource:WEGO - Web Gene Ontology Annotation Plot
Resource:Blast2GO
Resource:InterProScan
Resource:PubSearch
Resource:FunNet - Transcriptional Networks Analysis
Resource:IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
TestGeneOntologyPreload
Resource:elk-reasoner
Resource:AmiGO
Resource:Semantic Measures Library
Resource:Babelomics
Resource:Integrated Manually Extracted Annotation
RelatedTo
Resource
SuperCategory
ModifiedDate
Resource:NIF Data Federation
Listedby
Label
Editor
Visualization
Annotation
Analysis
Semantic similarity
Functional similarity
Protein interaction
Text mining
Term enrichment
Slimmer-type tool
Statistical analysis
Software library
Data warehouse
Database
Annotation editor
Ontology
Annotation visualization
Annotation search engine
Annotation browser
Keywords
Resource:GO
Is part of
Id
Catalog
Software repository
Has role
File:GO Tools.PNG
ExampleImage
Definition
DefiningCitation
CurationStatus
Public
Free
Acknowledgement required
The community can contribute to this resource
Availability
AltURL
Abbrev