2011-10-17T01:20:56-07:00
Resource:SGN
SGN, SGN ref
curated
http://solgenomics.net/
The SOL Genomics Network (SGN) is a Clade Oriented Database (COD) containing genomic, genetic, phenotypic and taxonomic information for plant genomes. SGN originally concentrated on the Euasterid clade, including the families Solanaceae (e.g. tomato, potato, eggplant, pepper and petunia) and Rubiaceae (coffee), but since our tools are not specific to these genomes, we are expanding our scope. Genomic information is presented in a comparative format and tied to other important plant model species such as Arabidopsis.
SGN is also one of the bioinformatics centers involved in tomato genome sequencing.
SGN is a community curated database. This means that you can contribute annotations to genes and phenotypes by becoming a locus editor. You can also upload, analyze and share your map and QTL data. Contributions by members of the community like you help keep the information in the database up to date and correct.
Some of our most popular tools include BLAST searches, the SolCyc biochemical pathways database, a CAPS experiment designer, an innovative Intron detection tool, an advanced Alignment Analyzer and browser for phylogenetic trees.
The SGN code and database are developed as an open source project, and is based on database schemas developed by the GMOD project and SGN-specific extensions. Contributions to the codebase are welcome. All SGN code is available from http://github.com/solgenomics
Category:0116076
nlx_89764
Resource:SGN
2011-07-19T00:00:00
20935049, 16010005
Sol Genomics Network
Resource
Synonym
ATC Inc. (Advanced Technologies Cambridge)
United States Department of Agriculture
National science foundation
Supporting Agency
Resource:Sol Genomics Network: Bulk download
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Resource:Boyce Thompson Institute for Plant Research
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Source code
Data analysis service
Data storage repository
Database
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Grant
File:SGN.PNG
ExampleImage
Definition
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