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No. Resource ID Entrez DB Entrez OID Link Name Link Category Link Url Link Query
1 nif-0000-03266 PubMed 16927420 2DGE-LC separation, trypsin digestion. HBPP lab 10 post mortem bn rz104 2d-lc-msms v1 Data: Chemical Link
2 nif-0000-03266 PubMed 17519225 depletion_Hs_Tcell_depletion10 Data: Chemical Link
3 nif-0000-03266 PubMed 16104056 HUPO plasma sample HUPO Sample ID ? Run at HUPO PPP Lab 12 Run on an ?? Data: Chemical Link
4 nif-0000-03266 PubMed 16684767 Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only. About 30 fractions, cys-containing peptides only, normal patients. Data: Chemical Link
5 nif-0000-03266 PubMed 17519225 Glyco_Hs_Tcell_Glycoproteins1 Data: Chemical Link
6 nif-0000-03266 PubMed 16927420 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_S12 Data: Chemical Link
7 nif-0000-03266 PubMed 22424236 HS_iPOP_PBMC2011_SecondBatch_879101114_r02 Data: Chemical Link
8 nif-0000-03266 PubMed 16927429 2DGE-IPG separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_300mcg_cam Data: Chemical Link
9 nif-0000-03266 PubMed 16927431 2DGE-IPG separation, Trypsin digestion. HBPP lab12 epilepsy bn_1149_96_300mcg_cam Data: Chemical Link
10 nif-0000-03266 PubMed 16912970 2DGE-IPG separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_2d-lc_cam Data: Chemical Link
11 nif-0000-03266 PubMed 22068332 Hs U2OS Synchronized Cell Samples Velos U2OS cells were grown in DMEM medium supplemented with 10% bovine serum, harvested by trypsinization, washed twice in phosphate-buffered saline (PBS), resuspended in 0.5 ml PBS, and lysed by adding 0.5 ml of 10 mM Tris pH 7.5, 10 M urea, 0.1% Rapigest. Synchronization was carried out by adding nocodazole to a final concentration of 330 nM for 18 h. Data: Chemical Link
12 nif-0000-03266 PubMed 23811049 Orbitrap Velos-CID. SILAC IMAC&TiO2. Replicate 1 Orbitrap Velos-CID Total protein extract, SILAC labeling and IMAC&TiO2 phosphopeptide enrichment. Replicate 1 Data: Chemical Link
13 nif-0000-03266 PubMed 16927428 1DGE-LC separation, trypsin digestion. HBPP lab 12 PostMortem rz104_4mcg_cam Data: Chemical Link
14 nif-0000-03266 PubMed 16912974 2DGE-LC separation, trypsin digestion. HBPP lab 10 post mortem bn rz104 2d-lc-msms v1 Data: Chemical Link
15 nif-0000-03266 PubMed 16927432 2DGE-LC separation, trypsin digestion. HBPP lab 10 post mortem bn rz104 2d-lc-msms v2 Data: Chemical Link
16 nif-0000-03266 PubMed 16912976 2DGE-IPG separation, trypsin digestion. human, post mortem, brain number RZ104, 2DGE-IPG separation, Trypsin digest, 200mcg_cam Data: Chemical Link
17 nif-0000-03266 PubMed 17450130 Dm_Adult_Heads_Cytoplasm_exp_044 Adult: heads, cytoplasmic fractions (soluble proteins) -Enzyme: Trypsin1:1 labeling using cleavable ICAT -Separation: SCX (60 fractions) -Avidin colums was used. -Sample validation: The head fraction was inspected for contaminants through the microscope and contaminating parts were removed manually.-SepPack cleanup was done Data: Chemical Link
18 nif-0000-03266 PubMed 16912972 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_PE Data: Chemical Link
19 nif-0000-03266 PubMed 16912974 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_S12 Data: Chemical Link
20 nif-0000-03266 PubMed 15188391 HUPO plasma sample HUPO Sample ID ? Run at HUPO PPP Lab 12 Run on an ?? Data: Chemical Link
21 nif-0000-03266 PubMed 19296674 21D1_secreted_573 Data: Chemical Link
22 nif-0000-03266 PubMed 16912973 LC+gas phase separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_gas_phase_cam Data: Chemical Link
23 nif-0000-03266 PubMed 17269739 22_mars Data: Chemical Link
24 nif-0000-03266 PubMed 16912970 2DGE-LC separation, trypsin digestion. HBPP PilotProject Lab_12: human, epilepsy surgery, brain number 1149/96: PFF Identifications 1149/96 200mcg Data: Chemical Link
25 nif-0000-03266 PubMed 12872007 enrichment for Halobacterium cell wall proteins; 1100-2000 m/z; Goo et al., unpublished data. Young Ah Goo ICAT experiments - yagwall_1120rpt directory Data: Chemical Link
26 nif-0000-03266 PubMed 17269739 16_clinprot_c8 Data: Chemical Link
27 nif-0000-03266 PubMed 17450130 Dm_Kc_nuclear_Chromatin_exp_037 Hypotonic lysis of Kc cells.Nuclear extraction, DNase 1 treatment -Amount used for experiment: 4mg -Labeling buffer used: 1% RapiGest -heavy ICAT only used for labeling -Enzyme: Trypsin -Separation: SCX (60 fractions) - Avidin purification- SepPak columns used Data: Chemical Link
28 nif-0000-03266 PubMed 16104056 HUPO plasma sample HUPO sample b1-SERUM run on an LTQ Data: Chemical Link
29 nif-0000-03266 PubMed 23811049 Orbitrap XL-CID. SILAC IMAC. Replicate 4 OrbitrapXL-CID Total protein extract, SILAC labeling and IMAC phosphopeptide enrichment. Replicate 4 Data: Chemical Link
30 nif-0000-03266 PubMed 17269739 17_wcx Data: Chemical Link
31 nif-0000-03266 PubMed 23334424 Dirty Peptide Qtrap sample, 2nd batch The new file collection contains: 1.Runs retargeted for the peptides of the initial peptide collection for which we did not have reasonable MS/MS spectra.These files usually start with the prefix .DP_MSD., missed. 3 strategies used to increase the success rate a) used a different triggering transition, 2) increased the injected amount and 3) repeated each run with two different intensity-triggering thresholds (so, each mix ran twice) 2.Runs targeted for the new batch of freshly ordered peptides. These peptides include more peptides with empirical observation for previously covered proteins or several C-terminals and peptides longer than usual, to increase the coverage of some of those (2%) proteins that we could not cover with the first order Data: Chemical Link
32 nif-0000-03266 PubMed 15188391 HUPO plasma sample HUPO sample b1-SERUM run on an LTQ Data: Chemical Link
33 nif-0000-03266 PubMed 16684767 Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only. About 30 fractions, cys-containing peptides only, trauma patients. Data: Chemical Link
34 nif-0000-03266 PubMed 17519225 WCL_Hs_Tcell_WholeCellLysate13 Data: Chemical Link
35 nif-0000-03266 PubMed 16967475 1DGE-LC separation, trypsin digestion. HBPP lab 12 PostMortem rz104_4mcg_cam Data: Chemical Link
36 nif-0000-03266 PubMed 17450130 Dm_Lar_peptides_FFE_exp_039 Whole extracts were prepared using RIPA buffer from 3rd Instar larvae -Amount used for experiment: 25mg per sample -Labeling buffer used: 1% Rapigest -Enzyme: Trypsin -Separation: FFE (30 fractions)- SepPack purification used Data: Chemical Link
37 nif-0000-03266 PubMed 18522751 MmPlasma IPAS11 late stage pancreatic cancer vs normal Mouse Plasma IPAS11 Data: Chemical Link
38 nif-0000-03266 PubMed 19260763 IPG 2 digest (peptides) description: mixed culture (kept at -20?C) glass beads, 0.75 % Rapigest experiment type: IPG strip, pH 3-5.6, 1mg tryptic peptides instrument: LTQ MS-analysis, operator: Sabine, Marko sample preparation: Sabine protocol: glass beads sample name: IPG2 strain: C. elegans, N2 age: mixed organism, part: whole worm amount of sample: 1 mg sample prepared on: hom. 14.03.06, IEF (16./17.03.06) Data: Chemical Link
39 nif-0000-03266 PubMed 16104056 HUPO plasma sample HUPO Sample ID b1-CIT P2 Window 1200-2000 Data: Chemical Link
40 nif-0000-03266 PubMed 16912973 2DGE-LC separation, trypsin digestion. HBPP lab 10 post mortem bn rz104 2d-lc-msms v1 Data: Chemical Link
41 nif-0000-03266 PubMed 17519225 Nuc_Hs_Tcell_Nuc4 Data: Chemical Link
42 nif-0000-03266 PubMed 15852344 exp 3: MSMS RP intensity selected of a Multidimensional LC and gel MS/MS study Comparison of protein identifications using 5 methods: (3) nanoLC-MS/MS with gas phase fractionation by ion abundance selection; Data: Chemical Link
43 nif-0000-03266 PubMed 12832456 Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT. ICAT determination of regulated lipid raft-associated protein complexes in T cells Data: Chemical Link
44 nif-0000-03266 PubMed 17519225 depletion_Hs_Tcell_depletion14 Data: Chemical Link
45 nif-0000-03266 PubMed 16912973 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_S12 Data: Chemical Link
46 nif-0000-03266 PubMed 21630462 Hs_colorectal Data: Chemical Link
47 nif-0000-03266 PubMed 16927431 2DGE-LC separation, trypsin digestion. HBPP PilotProject Lab_12: human, epilepsy surgery, brain number 1149/96: PFF Identifications 1149/96 200mcg Data: Chemical Link
48 nif-0000-03266 PubMed 17519225 LM_Hs_Tcell_LightMembrane4 Data: Chemical Link
49 nif-0000-03266 PubMed 23684311 Mtb_DirtyPeptides_ORBI Data: Chemical Link
50 nif-0000-03266 PubMed 17519225 Nuc_Hs_Tcell_Nuc3 Data: Chemical Link
51 nif-0000-03266 PubMed 15188391 HUPO plasma sample HUPO Sample ID b1-CIT P2 Window 1200-2000 Data: Chemical Link
52 nif-0000-03266 PubMed 22068332 Hs U2OS NON-Synchronized Cell Samples Velos U2OS cells were grown in DMEM medium supplemented with 10% bovine serum, harvested by trypsinization, washed twice in phosphate-buffered saline (PBS), resuspended in 0.5 ml PBS, and lysed by adding 0.5 ml of 10 mM Tris pH 7.5, 10 M urea, 0.1% Rapigest. Synchronization was carried out by adding nocodazole to a final concentration of 330 nM for 18 h. Data: Chemical Link
53 nif-0000-03266 PubMed 16927420 LC+gas phase separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_gas_phase_cam Data: Chemical Link
54 nif-0000-03266 PubMed 17450130 Dm_Kc_N-Glyc_exp_041 Drosophila Data: Chemical Link
55 nif-0000-03266 PubMed 16912976 2DGE-LC separation, trypsin digestion. HBPP lab 10 post mortem bn rz104 2d-lc-msms v2 Data: Chemical Link
56 nif-0000-03266 PubMed 17450130 Dm_S2_Cytoplasm_FFE_exp_040 Hypotonic lysis of S2 cells, Cytoplasm fraction prepared by ultracentrifugation -Amount used for experiment: 2mg -Labeling buffer used: 6M Urea, 50mM Tris/HCl pH 8.3, 0.05% SDS, 5mM EDTA -Enzyme: Trypsin -Separation: FFE (30 fractions), done by Johan Mamstroem at IMSB-Seppak purification was done Data: Chemical Link
57 nif-0000-03266 PubMed 23811049 Hyphal form protein extract. Orbitrap Velos Candida albicans hyphal form protein extract. 4 MS runs: H1: Fractions 1-3; H2: Fractions: 4-6, H3: 7-9, H4: 10-12 Data: Chemical Link
58 nif-0000-03266 PubMed 12872007 replicate enrichment for soluble proteins; 1100-2000 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):510 Young Ah Goo ICAT experiments - yagsn2_1120rpt directory Data: Chemical Link
59 nif-0000-03266 PubMed 17450130 Dm_S2_cytoplasmic_exp_032 Hypotonic lysis of S2 cells. -Amount used for experiment: 2mg -Labeling buffer used: 6M Urea, 50mM Tris/HCl pH 8.3, 0.05% SDS, 5mM EDTA -Enzyme: Trypsin -Separation: SCX (60 fractions)-Avidin columns was used. Data: Chemical Link
60 nif-0000-03266 PubMed 17450130 Dm_Kc_nuclear_Chromatin_exp_071 Kc926Hypotonic lysis of Kc cells.Nuclear extraction, DNase 1 treatment -Amount used for experiment: 4mg -Labeling buffer used: 1% RapiGest -heavy ICAT only used for labeling -Enzyme: Trypsin -Separation: SCX (60 fractions) - Avidin purification- SepPak columns used Data: Chemical Link
61 nif-0000-03266 PubMed 12832456 Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT. ICAT determination of regulated lipid raft-associated protein complexes in T cells Data: Chemical Link
62 nif-0000-03266 PubMed 17450130 Dm_Kc_membrane_Autophagosomes_exp_026 Kc-cells (rapamycin and untreated) were disrupted by hypotonic lysis. A membrane fraction was obtained by ultracentrifugation @ 100'000g. The membrane fraction was resuspended and fractionated on an Optiprep step gradient by ultracentrifugation @ @ 100'000g.Autophagosomes were collected and ICAT labeled Rapamycin-treated (light), untreated (heavy) -Amount used for experiment: ~0.2mg per sample -Labeling buffer used: 8M Urea, 50mM Tris/HCl pH 8.3, 0.25% SDS, 5mM EDTA -Enzyme: Trypsin -Separation: no subfractionationAvidin columns usedSepPack purification of samples Data: Chemical Link
63 nif-0000-03266 PubMed 16927432 2DGE-IPG separation, trypsin digestion. human, post mortem, brain number RZ104, 2DGE-IPG separation, Trypsin digest, 200mcg_cam Data: Chemical Link
64 nif-0000-03266 PubMed 17450130 Dm_Kc_Golgi_exp_045 Hypotonic lysis of Kc cells. Lysate centrifuged at 13,000 rpm to obtain a Light mitochondrial pellet (LMP). The LMP was solubilised in 50% iodixanol (optiprep) and layered on gradients of 30%, 10% and 5% iodixanol and ultracentrifuged at 18,000 rpm for 4 hours. The glogi fraction interfaces between 5% and 10% iodixanol. It was collected, washed and dissolved in 1% rapigest. No ICAT labelling was performed and the samples were cleaned up using SepPak Data: Chemical Link
65 nif-0000-03266 PubMed 16927429 1DGE-LC separation, trypsin digestion. HBPP lab12 epilepsy bn_1149_96_4mcg_cam Data: Chemical Link
66 nif-0000-03266 PubMed 16912975 2DGE-LC separation, trypsin digestion. Data: Chemical Link
67 nif-0000-03266 PubMed 16927427 1DGE-LC separation, trypsin digestion. HBPP lab 12 PostMortem rz104_4mcg_cam Data: Chemical Link
68 nif-0000-03266 PubMed 16912971 2DGE-LC separation, trypsin digestion. Data: Chemical Link
69 nif-0000-03266 PubMed 17519225 WCL_Hs_Tcell_WholeCellLysate6 Data: Chemical Link
70 nif-0000-03266 PubMed 16912974 LC+gas phase separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_gas_phase_cam Data: Chemical Link
71 nif-0000-03266 PubMed 18522751 MmPlasma IPAS14 late stage colon cancer vs normal Harvard Mouse Plasma IPAS14 Harvard Data: Chemical Link
72 nif-0000-03266 PubMed 17519225 PM_Hs_Tcell_PlasmaMembrane6 Data: Chemical Link
73 nif-0000-03266 PubMed 12872007 enrichment for proteins in precipitant following ultracentrifugation; Goo et al., 2003, Mol Cell Proteomics 2(8):505 Young Ah Goo ICAT experiments - yagpt directory Data: Chemical Link
74 nif-0000-03266 PubMed 16912970 2DGE-IPG separation, Trypsin digestion. HBPP lab12 epilepsy bn_1149_96_300mcg_cam Data: Chemical Link
75 nif-0000-03266 PubMed 17450130 Dm_Emb_0-24hAEL_exp_055 embryos were collected 0-24h AEL.Total extractCarbamido-methylation of cys Data: Chemical Link
76 nif-0000-03266 PubMed 16927431 2DGE-IPG separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_2d-lc_cam Data: Chemical Link
77 nif-0000-03266 PubMed 17450130 Dm_Adult_membranes_exp_054 Whole flies extracts were separated into nuclear, cytoplasmic and membrane fractions by hypotonic lysis. The ultracentrifugation was performed thrice to get a pure membrane fraction. Data: Chemical Link
78 nif-0000-03266 PubMed 19954229 21D1_secreted_558 Data: Chemical Link
79 nif-0000-03266 PubMed 19260763 peptide FFE 01.11.05 description: mixed culture N2, P1, 7 mg digested incl. 1 % Rapigest (30./31.10.05) experiment type: FFE mannitol pH 4-7, 7 mg tryptic peptides description: load 7 mg instrument: LTQ LC-analysis, operator: Sabine MS-analysis, operator: Sabine, Marko sample preparation: Marko, Sabine protocol: glass beads, differential centrifugation sample name: Pellet P1 strain: C. elegans, N2 age: mixed organism, part: whole worm sample prepared on: FFE 01.11.05 Data: Chemical Link
80 nif-0000-03266 PubMed 16912969 2DGE-LC separation, trypsin digestion. Data: Chemical Link
81 nif-0000-03266 PubMed 16927428 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_PE Data: Chemical Link
82 nif-0000-03266 PubMed 19260763 mitochondria RG/urea description: two samples of mitochondria (Romana) experiment type: SCX LC-gradient: SAB_GRAD_MOD gradient programme: buffer A (10 mM KH2PO4, 25 % ACN, pH 3.0); buffer B (buffer A plus 350 mM KCl); flow 0.8 ml/min; 90 min column: 200 x 4.6 mm instrument: LTQ LC-analysis, operator: Sabine, Romana MS-analysis, operator: Sabine sample preparation: Romana, Sabine protocol: glass beads, Rapigest and urea sample name: mitochondria strain: C. elegans, N2 age: mixed organism, part: whole worm/mitochondria amount of sample: 14.7: RG: 350 ug; 13.11: RG: 1mg, urea: 750 ug sample prepared on: preparation 14.7 and 13.11.06 Data: Chemical Link
83 nif-0000-03266 PubMed 12872007 enrichment for Halobacterium cell wall proteins, Goo et al., unpublished data. Young Ah Goo ICAT experiments - YAGwall directory Data: Chemical Link
84 nif-0000-03266 PubMed 17519225 Raft_Hs_Tcell_Raft3 Data: Chemical Link
85 nif-0000-03266 PubMed 17519225 depletion_Hs_Tcell_depletion4 Data: Chemical Link
86 nif-0000-03266 PubMed 15228325 Human Erythroleukemia K562 cell line huamn erythroleukemia K5632 cell line I think... Data: Chemical Link
87 nif-0000-03266 PubMed 16912972 1DGE-LC separation, trypsin digestion. HBPP lab 12 PostMortem rz104_4mcg_cam Data: Chemical Link
88 nif-0000-03266 PubMed 12872007 enrichment for membrane proteins; GPF 1200-2000 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):506 Young Ah Goo ICAT experiments - YAGmem1220 directory Data: Chemical Link
89 nif-0000-03266 PubMed 22117078 SPyogenes serotype M1 2011 LTQ ICR FT Streptococcus pyogenes M1 serotype grown in human plasma and under fatty acid free environments. Samples were digested and cleaned up using C18. Data was analyzed on an LTQ-ICR-FT instrument Data: Chemical Link
90 nif-0000-03266 PubMed 17519225 LM_Hs_Tcell_LightMembrane2 Data: Chemical Link
91 nif-0000-03266 PubMed 22424236 HS_iPOP_PBMC2011_FirstBatch_r1 Data: Chemical Link
92 nif-0000-03266 PubMed 12832459 Lipid Rafts prepared from Human Jurkat T-cell stimulated via T cell receptor/CD28 cross-linking and from control (unstimulated) cells. Labeled with old ICAT. ICAT determination of regulated lipid raft-associated protein complexes in T cells Data: Chemical Link
93 nif-0000-03266 PubMed 16912973 2DGE-IPG separation, trypsin digestion. human, post mortem, brain number RZ104, 2DGE-IPG separation, Trypsin digest, 200mcg_cam Data: Chemical Link
94 nif-0000-03266 PubMed 17519225 WCL_Hs_Tcell_WholeCellLysate11 Data: Chemical Link
95 nif-0000-03266 PubMed 17450130 Dm_Kc_lysate_exp_078 1.Collect cells, wash with PBS.2.lyse cell with buffer D? (20mM phosphate pH 7.4, 2mM EDTA, 150mM NaCl, 4% glycerol, 1% Triton X-100, 0.5mM NaVO4, 0.4mM DTT and protease inhibitor). Shake at 4?C for 20?. After centrifugation, the supernatant is diluted with buffer D (buffer D? without Triton) to 0.75% Triton, centrifuge again. 3.Add 100ul anti-HA beads to the supernatant, shake at 4C for 4 hrs.4.Wash beads with buffer D+0.5% Trion X-100 4 times, then with buffer D (without protease inhibitor) twice. Bound proteins are eluted by 0.2mM glycine (pH 2.5) followed by precipitation with acetone. Data: Chemical Link
96 nif-0000-03266 PubMed 17450130 Dm_Lar_FFE_Protein_exp_061 Whole proetin extracts were prepared using RIPA buffer from 3rd Instar larvae -Amount used for experiment: 25mg per sample -Labeling buffer used: 1% Rapigest -No trypsin used -ICAT labelled-FFE - pH 4-7 Data: Chemical Link
97 nif-0000-03266 PubMed 17519225 WCL_Hs_Tcell_WholeCellLysate7 Data: Chemical Link
98 nif-0000-03266 PubMed 16912970 1DGE-LC separation, trypsin digestion. HBPP lab12 epilepsy bn_1149_96_4mcg_cam Data: Chemical Link
99 nif-0000-03266 PubMed 16967475 1DGE-LC separation, trypsin digestion. HBPP_PilotProject_Lab_13; epilepsy surgery; brain number 1149/96 S12; PFF Identifications 1DE_PE Data: Chemical Link
100 nif-0000-03266 PubMed 16912976 LC+gas phase separation, trypsin digestion. HBPP lab 12 PostMortem bn_rz104_gas_phase_cam Data: Chemical Link